PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca005862G02
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 192aa    MW: 21257.8 Da    PI: 9.5139
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca005862G02genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-09147184441
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                       k  rr+++NReAAr sR+RKk ++++Le     L++ 
  Gh_Sca005862G02 147 QKTLRRLAQNREAARNSRLRKKTYVQQLESSRLRLTEL 184
                      6889*************************865555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502179.082146192IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-6148189No hitNo description
PfamPF001705.9E-7148186IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7150182No hitNo description
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPSWPTYIKS LQDRFGCRPF WDSIRELVNL KQEGSISSLE SNNVGVVANT LHYGALNTSI  60
GATATVSCGM GCLDTGQFMY QKGATLGALL GNGQIKNWAD SGLADNSQQT DTSTDVDTNH  120
KNQLHGVQHG AVMVKTVDQS KSKSNDQKTL RRLAQNREAA RNSRLRKKTY VQQLESSRLR  180
LTELEQELQR AQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.252550.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438631.11e-83PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ9SX271e-31PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLA0A0D2M6L31e-138A0A0D2M6L3_G
STRINGPOPTR_0008s11710.18e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3723622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.12e-19bZIP family protein